江瑞

江瑞

清华大学数据科学研究院2017年09月04日

自动化系副教授、RONG兼职教授

信息处理研究所

通信地址:北京清华大学自动化系  邮政编码:100084
联系电话:010-62795578  Fax: 010-62786911
Email:ruijiang@tsinghua.edu.cn

教育背景

1992年9月-1997年7月 清华大学自动化系自动控制专业学习,获工学学士学位

1997年9月-2002年1月 清华大学自动化系检测技术及自动化装置专业学习,获工学博士学位

工作履历

2007年-至今,清华大学自动化系,副教授

2004年-2007年,美国南加州大学,博士后

2002年-2003年,香港科技大学,博士后

研究领域

生物信息学、系统生物学、模式识别、机器学习、统计推断

研究概况

[1] 集成多种信息源识别导致常见疾病的遗传变异 国家自然科学基金 2009年1月至今

[2] 基于生物网络的全基因组关联研究及其大规模并行实现 国家实验室交叉学科基金 2008年11月至今

[3] 现场可编程逻辑阵列及其在个人基因组计划中的应用 国际合作项目 2008年7月至今

[4] 清华大学骨干人才支持计划 支持计划 2007年8月至今

奖励与荣誉

2008年,清华大学教学成果一等奖

2008年,北京市教学成果一等奖

2009年,国家级教学成果二等奖

学术成果

主要论著

  1. Yong Chen, Tao Jiang, Rui Jiang*, Uncover disease genes by maximizing information
    flow in the phenome-interactome network, Bioinformatics, 27:i167-i176, 2011
  2. Wangshu Zhang, Yong Chen, Fengzhu Sun, Rui Jiang*, DomainRBF: a Bayesian regression approach to the prioritization of candidate domains for complex diseases, BMC Systems Biology, 5:55, 2011
  3. Jianxing Feng, Rui Jiang*, Tao Jiang*, A max-flow based approach to the identification of protein complexes using protein interaction and microarray data, IEEE-ACM Transactions on Computational Biology and Bioinformatics, 8(3): 621-634, 2011
  4. Wangshu Zhang, Fengzhu Sun, Rui Jiang*, Integrating multiple protein-protein interaction networks to prioritize disease genes: A Bayesian regression approach, BMC Bioinformatics 12(Supp 1):S11, 2011
  5. Xiaolin Hao, Rui Jiang, Ting Chen*, Clustering 16S rRNA for OTU prediction: A method of unsupervised Bayesian clustering, Bioinformatics, 27: 611-618, 2011
  6. Suying Bao, Rui Jiang, WingKeung Kwan, BinBin Wang, Xu Ma, You-Qiang Song, Evaluation of next-generation sequencing software in mapping and assembly, Journal of Human Genetics, 56:406-414, 2011
  7. Rui Jiang*, Mingxin Gan, Peng He, Constructing a gene semantic similarity network for the prioritization of candidate genes, BMC Systems Biology, in press, 2011
  8. Jiaxin Wu, Mingxin Gan, Wangshu Zhang, Rui Jiang*, Extraction of sequence conservation features for the prioritization of candidate single amino acid polymorphisms, International Journal of Information Engineering and Electronic Business, 3(2):1-10, 2011
  9. Jiaxin Wu, Mngxin Gan, Wangshu Zhang, Rui Jiang*, Prediction of Disease-Associated Single Amino Acid Polymorphisms Based on Physiochemical Features, International Journal of Bioscience, Biochemistry and Bioinformatics, 1(2):102-108, 2011
  10. MAQC Consortium. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models, Nature Biotechnology, 28:827-838 , 2010
  11. Wenhui Wang, Wangshu Zhang, Rui Jiang*, Yihui Luan*, Prioritisation of associations between protein domains and complex diseases using domain–domain interaction networks, IET Systems Biology, 4(3):212-222, 2010
  12. Wangshu Zhang, Yong Chen, Rui Jiang*, Comparative study of network-based prioritizations of human protein domains associated with complex diseases, Frontiers in Electronic Engineering in China, 5(2), 107-118, 2010
  13. Wanwan Tang, Xuebing Wu, Rui Jiang*, Yanda Li*, Epistatic module detection for case-control studies: Bayesian modules and Gibbs sampling strategies, PLoS Genetics, 5(5): e1000464, 2009
  14. Xuebing Wu, Qifang Liu, Rui Jiang*, Align human interactome with phenome to identify causative genes and networks underlying disease families, Bioinformatics, 25(1):98-104, 2009
  15. Rui Jiang*, Wanwan Tang, Xuebing Wu, Wenhui Fu, A random forest approach to the detection of epistatic interactions in case-control studies, BMC Bioinformatics, 10 (Suppl 1):S65, 2009
  16. Rui Jiang, Ting Chen, and Fengzhu Sun*. Bayesian models and Gibbs sampling strategies for local graph alignment and motif finding in stochastic networks, Communications in Information and Systems, 9(4):347-370, 2009
  17. Xuebing Wu, Rui Jiang, Michael Q. Zhang, Shao Li*, Network-based global inference of human disease genes, Molecular Systems Biology, 4:189, 2008
  18. Rui Jiang, Hua Yang, Linqi Zhou, C.-C. Jay Kuo, Fengzhu Sun, Ting Chen*, Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the Study of disease mutations, American Journal of Human Genetics, 81(2):346-360, 2007
  19. Rui Jiang, Zhidong Tu, Ting Chen*, Fengzhu Sun*, Network motif identification in stochastic networks, Proc Natl Acad Sci USA, 103(25): 9404-9409, 2006
  20. Rui Jiang, Hua Yang, Fengzhu Sun, Ting Chen*, Searching for interpretable rules for disease mutations: a simulated annealing strategy, BMC Bioinformatics, 7:417, 2006
  21. K. Y. Szeto, and Rui Jiang. A Quasi-Parallel realization of the investment frontier in computer resource allocation using simple genetic algorithm on a single computer. Lecture Notes in Computer Science, 2367:116~118, 2002
  22. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. A multi-agent cooperating approach to quasi-parallel genetic algorithms. Acta Electronica Sinica. 30(10):1490-1495, 2002
  23. Rui Jiang, Yupin Luo, and Dongcheng Hu. Adaptive genetic algorithm based on population entropy estimating. Journal of Tsinghua University (Science and Technology). 42(3):358-361, 2002
  24. Rui Jiang, Yupin Luo, and Dongcheng Hu. Distributed parallel genetic algorithms based on multi- agent cooperating. Journal of Tsinghua University (Science and Technology). 42(9): 1209-1213, 2002
  25. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. Coordinating exploration and exploitation to construct genetic algorithms. Tsinghua Science and Technology. 7(5):608-618, 2002
  26. Rui Jiang, Yupin Luo, Dongcheng Hu, and K. Y. Szeto. A genetic algorithm by coordinating exploration and exploitation: Convergence properties and performance analyses. Chinese Journal of Computers. 24(12):1233-1241, 2001
  27. Dongcheng Hu, Rui Jiang, and Yupin Luo. An adaptive classifier system tree for extending genetics-based machine learning in a dynamic environment. Artificial life and robotics. 4(1):7-11, 2000
  28. Jiaxin Wu, Wangshu Zhang, Rui Jiang*, Comparative Study of Ensemble Learning Approaches in the Identification of Disease Mutations, Proceedings of the 3rd International Conference on Biomedical Engineering and Informatics (BMEI 2010), Yantai, Shandong, China, 2306-2310, 2010
  29. Rui Jiang*, Feng Zeng, Wangshu Zhang, Xuebing Wu, and Zhihong Yu. Accelerating genome-wide association studies using CUDA compatible graphics cards, Proceedings of the 2009 joint conference on bioinformatics, systems biology and intelligent computing (IJCBS2009), Shanghai, August 3-5, 70-76, 2009
  30. Wangshu Zhang, Feng Zeng, Xuebing Wu, Xuegong Zhang, and Rui Jiang*. A comparative study of ensemble learning approaches in the classification of breast cancer metastasis, Proceedings of the 2009 joint conference on bioinformatics, systems biology and intelligent computing (IJCBS2009), Shanghai, August 3-5, 242-245, 2009
  31. Rui Jiang*, Wanwan Tang, Xuebing Wu, Wenhui Fu, A random forest approach to the detection of epistatic interactions in case-control studies, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 2009
  32. Xuebing Wu, Qifang Liu, Rui Jiang*, Identification of disease genes via network alignment of human interactome and phenome, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 890, 2009
  33. Feng Zang, Xuebing Wu, Xuegong Zhang, Rui Jiang*, A functional canonical correlation analysis approach to re-verse engineering of in silico gene regulatory networks, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 894, 2009
  34. Wenhui Wang, Wangshu Zhang, Rui Jiang*, Yihui Luan, An approach to the discovery of associations of protein domains and complex diseases, Proceedings of the Seventh Asia Pacific Bioinformatics Conference (APBC 2009), Beijing, China, January 13-16, 908, 2009
  35. Xuebing Wu, Feng Zeng, Rui Jiang*, Integrative inference of gene networks from expression data, Proceedings of the 2008 Joint RECOMB Satellite Conference on Regulatory Genomics-Systems biology-DREAM3, Boston, Massachusetts, USA, Oct 29-Nov3, 2008
  36. Jianxing Feng, Rui Jiang, Tao Jiang, A max-flow based approach to the identification of protein complexes, Proceedings of the 7th Annual International Conference on Computational Systems Bioinformatics (CSB2008), Stanford, California, USA, August 26-29, 2008
  37. Rui Jiang* and Xuegong Zhang, A comparative study of statistical learning methods in the prioritization of nonsynonymous single nucleotide polymorphisms, Proceedings of the Sixth Asia Pacific Bioinformatics Conference (APBC 2008), Kyoto, Japan, January 14-17, 2008
  38. Rui Jiang, and K. Y. Szeto. Extraction of investment strategies based on moving averages: A genetic algorithm approach. Proceedings of the International Conference on Computational Intelligence for Financial Engineering (CIFER’03), Hong Kong, 2003
  39. Rui Jiang, and K. Y. Szeto. Discovering investment strategies in portfolio management: A genetic algorithm approach. Proceedings of the 9th International Conference on Neural Information Processing (ICONIP’02), Singapore, Vol. 3, 2002
  40. Rui Jiang, K. Y. Szeto, Yupin Luo, and Dongcheng Hu. A genetic algorithm architecture by coordinating exploration and exploitation. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2001), San Francisco, 383~390, 2001
  41. Dongcheng Hu, Rui Jiang, Yupin Luo, and K. Y. Szeto. An approach to cooperative genetic algorithms. Proceedings of the Sixth International Symposium on Artificial Life and Robotics (AROB 6’01), Tokyo, Japan, Vol.2, 329~332, 2001
  42. Rui Jiang, K. Y. Szeto, Yupin Luo, and Dongcheng Hu. A path-splitting algorithm for large traveling salesman problems with distributed simulated annealing implementation. Proceedings of the Third Asian Control Conference. Shanghai, China. CDROM, 2000
  43. Dongcheng Hu, Rui Jiang, Yupin Luo. Effects of population topology in distributed parallel genetic algorithms. Proceedings of the Fifth International Symposium on Artificial Life and Robotics (AROB 5’00), Oita, Japan. Vol.1, 108~111, 2000